Islam, M.D. Sharmin, T.; Tipo, I.H.; Saha, A.; Yesmin, S.; Roy, M.G.; Brindha, S.; Kuroda, Y.; Islam, M.M. The Immunogenicity of DENV1–4 ED3s Strongly Differ despite Their Almost Identical Three-Dimensional Structures and High Sequence Similarities. Int. J. Mol. Sci. 2023, 24, 2393.
Aklima J, Onchaiya S, Saotome T, Velmurugan P, Motoichi T, Naima J, Kuroda Y, Ohta Y. Direct Analysis of Mitochondrial Damage Caused by Misfolded/Destabilized Proteins. International Journal of Molecular Science (Int J Mol Sci.) 2022 Aug 31;23(17):9881. doi: 10.3390/ijms23179881. PMID: 36077279; PMCID: PMC9456338.
Yuanpeng Janet Huang, Ning Zhang, Beate Bersch, Krzysztof Fidelis, Masayori Inouye, Yojiro Ishida, Andriy Kryshtafovych, Naohiro Kobayashi, Yutaka Kuroda, Gaohua Liu, Andy LiWang , G V T Swapna, Nan Wu, Toshio Yamazaki, Gaetano T Montelione, Assessment of Prediction Methods for Protein Structures Determined by NMR in CASP14: Impact of AlphaFold2. Proteins 2021 Sep 24. doi: 10.1002/prot.26246
Saotome T, Onchaiya S, Brindha S, Mezaki T, Unzai S, Noguchi K, Martinez JC, Kidokoro SI, Kuroda Y. Blocking PSD95-PDZ3’s amyloidogenesis through point mutations that inhibit high-temperature reversible oligomerization (RO). FEBS J. 2021 Dec 30. doi: 10.1111/febs.16339. Epub ahead of print. PMID: 34967499.
- Rahman N, Miura S, Okawa M, Kibria MG, Islam MM, Kuroda Y. Solubility Controlling Peptide Tags of Opposite Charges Generate a Bivalent Immune Response Against Dengue ED3 Serotypes 3 and 4. Front Immunol. 2021 Jun 11;12:671590.
- Ando S, Matsuzawa Y, Tsurui H, Mizutani T, Hall D, Kuroda Y. Stochastic modelling of the effects of human-mobility restriction and viral infection characteristics on the spread of COVID-19. Sci Rep. 2021 Mar 25;11(1):6856. doi: 10.1038/s41598-021-86027-2
- Wu nan, Tomonori Saotome, Satoru Unzai, Yutaka Kuroda and Toshio Yamazaki, Solution structure of Gaussia Luciferase with five disulfide bonds and identification of a putative coelenterazine binding cavity by heteronuclear NMR, Scientific Reports volume 10, Article number: 20069 (2020)
- Saotome T, Mezaki T, Brindha S, Unzai S, Martinez JC, Kidokoro SI, Kuroda Y. Thermodynamic Analysis of Point Mutations Inhibiting High-Temperature Reversible Oligomerization of PDZ3. Biophysical Journal. 2020. 119.7, 1391-1401
- Rahman N, Islam MM, Kibria MG, Unzai S, Kuroda Y. A systematic mutational analysis identifies a 5-residue proline tag that enhances the in vivo immunogenicity of a non-immunogenic model protein. FEBS Open Bio. 10(10):1947-1956, 2020.
- Rahman N, Islam MM, Unzai S, Miura S, Kuroda Y. Nanometer-Sized Aggregates Generated Using Short Solubility Controlling Peptide Tags Do Increase the In Vivo Immunogenicity of a Nonimmunogenic Protein. Mol Pharm. 17(5):1629-1637, 2020.
- Mohammad M. Islam, Shiho Miura, Mohammad. N. Hasan, Nafsoon Rahman, Yutaka Kuroda, Anti-Dengue ED3 long-term immune response with T-cell memory generated using Solubility Controlling Peptide tags , Frontiers in Immunology, Published online 2020 Mar 17. doi: 10.3389/fimmu.2020.00333
- Mohammad, M Islam, Kei Kobayashi, Shun Ichi Kidokoro, Yutaka Kuroda, Hydrophobic surface residues can stabilize a protein through improved water-protein interactions., FEBS J. 2019 Jun 7. doi.org/10.1111/febs.14941. 286.20. 4122-4134
- Tomonori Saotome, Maxime Doret, Manjiri Kulkarni, Yin-Shan Yang, Philippe Barthe, Yutaka Kuroda and Christian Roumestand.Folding of the Ig-Like Domain of the Dengue Virus Envelope Protein Analyzed by High-Hydrostatic-Pressure NMR at a Residue-Level Resolution Biomolecules. 2019 Jul 26;9(8). pii: E309. doi: 10.3390/biom9080309.
- Richa Tambi, Gentaro Morimoto, Satoshi Kosuda, Makoto Taiji, Yutaka Kuroda, Large-scale all-atom molecular dynamics alanine-scanning of IAPP octapeptides provides insights into the molecular determinants of amyloidogenicity, Scientific Reports, 9.2530 2019
- Golam M Kabir, Mohammad M Islam, Yutaka Kuroda. Reversible association of proteins into sub-visible amorphous aggregates using short solubility controlling peptide tags. Biochim Biophys Acta.1866(2): 366- 372(2018)
- Mohammad M. Islam and Yutaka Kuroda. A hetero-micro-seeding strategy for readily crystallizing closely related protein variants, Biochemical and Biophysical Research Communications, 493(1):504-508 (2017)